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1 files changed, 43 insertions, 0 deletions

diff --git a/csv_to_svg_path.py b/csv_to_svg_path.py
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+++ b/csv_to_svg_path.py
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+#!/usr/bin/env python3
+import textwrap
+
+def svg_path_from_points(points, r):
+    points_joined = ' '.join(f'{x:.6f} {y:.6f}' for x, y in points)
+    return textwrap.dedent(f'''
+    <?xml version="1.0" encoding="UTF-8" standalone="no"?>
+    <svg
+        xmlns:dc="http://purl.org/dc/elements/1.1/"
+        xmlns:cc="http://creativecommons.org/ns#"
+        xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+        xmlns:svg="http://www.w3.org/2000/svg"
+        xmlns="http://www.w3.org/2000/svg"
+        xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+        version="1.1"
+        width="{r*2}mm"
+        height="{r*2}mm"
+        viewBox="0 0 {r*2} {r*2}"
+        id="svg2">
+        <g id="layer1">
+            <path id="path2991"
+                style="fill:none;stroke:#000000;stroke-width:0.1mm;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1"
+                d="M 0,0 L {points_joined}" />
+        </g>
+    </svg>
+    ''').strip()
+
+if __name__ == '__main__':
+    import argparse
+    parser = argparse.ArgumentParser()
+    parser.add_argument('locus_csv', help='CSV file containing locus coordinates. Format: lambda, x, y, z.')
+    parser.add_argument('-r', '--radius', type=float, default=100, help='Radius of plot area in mm')
+    args = parser.parse_args()
+
+    import csv, ast
+    points = []
+    with open(args.locus_csv, newline='') as f:
+        for row in csv.reader(f):
+            # use literal_eval to handle entries like "1.153E-5"
+            λ, x, y, z = (ast.literal_eval(e.strip()) for e in row)
+            points.append((x*args.radius*2, y*args.radius*2))
+
+    print(svg_path_from_points(points, args.radius))